Osteoporosis (OS) is the most common skeletal disease resulting in fracture. The aim of this study was to identify potential miRNAs that could function as specific biomarkers for identification and treatment of OS with miRNA-seq. MiRNA high-throughput data were downloaded from The Cancer Genome Atlas (TCGA) dataset. There were total 10 samples, including five normal specimen and five patient samples with spinal cord injury. Differentially expressed miRNAs were screened using SAMR package in R language with FDR<0.05 and Log FC>1. Target genes of OS were predicted by Targetscan software. And functional enrichment analysis was performed on the up- and down-regulated miRNAs by DAVID software basing on the hypergeometric analysis. Meanwhile, differentially expressed genes (DEGs) of mRNA were analyzed to construct the regulating network. Totally, 799 differentially expressed miRNAs were identified, among which six screened miRNAs, that is miR365, miR-10b, miR-129-3P, miRNA671-5p, miR-141 and miR-25, had the potential to serve as biomarkers of OS. GO and KEGG analysis revealed that three pathways, including pathway in cancer, phosphatidylinositol signaling system and endocytosis, had the greatest effect on osteoporosis disease, Meanwhile, the miRNAs related with these pathways were almost up-regulated. Moreover, the most enriched GO and KEGG terms were both related to plasma membrane, indicating its association with the occurrence of OS disease. Six miRNAs identified in the present study could serve as prognostic and predictive markers for OS patients. Phosphatidylinositol signaling system, the most enriched GO term, possessed potential application in diagnosis and treatments of OS patients.
[1]Kunming Med Univ, Affiliated Hosp 6, Peoples Hosp Yuxi City, Dept Nephrol, Yuxi 653100, Yunan, Peoples R China.
[2]Kunming Med Univ, Affiliated Hosp 6, Peoples Hosp Yuxi City, Dept Orthoped Surg, Yuxi 653100, Yunan, Peoples R China.
[3]Kunming Med Univ, Affiliated Hosp 6, Peoples Hosp Yuxi City, Dept Gen Surg, Yuxi 653100, Yunan, Peoples R China.
[4]Hebei Univ Engn, Dept Orthoped Surg, Affiliated Hosp, Handan 056001, Hebei, Peoples R China.
[5]Harbin Med Univ, Dept Orthoped, Affiliated Hosp 1, Harbin 150081, Heilongjiang, Peoples R China.
[6]Jizhong Energy Fengfeng Grp, Dept Orthoped Surg, Gen Hosp, Handan 056001, Hebei, Peoples R China.
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