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Identification of the miRNA-mRNA regulatory network of small cell osteosarcoma based on RNA-seq  期刊论文  

  • 编号:
    73f21a14-493d-4f61-a36e-16f11266bf72
  • 作者:
    Xie, Lin(谢琳)#[1,2]Liao, Yedan#[2]Shen, Lida[2];Hu, Fengdi[2];Yu, Sunlin[2];Zhou, Yonghong[2];Zhang, Ya[1];Yang, Yihao[1];Li, Dongqi[1];Ren, Minyan[2];Yuan, Zhongqin[2];Yang, Zuozhang(杨祚璋)*[1]
  • 语种:
    英文
  • 期刊:
    ONCOTARGET ISSN:1949-2553 2017 年 8 卷 26 期 (42525 - 42536) ; JUN 27
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  • 摘要:

    Small cell osteosarcoma (SCO) is a rare subtype of osteosarcoma characterized by highly aggressive progression and a poor prognosis. The miRNA and mRNA expression profiles of peripheral blood mononuclear cells (PBMCs) were obtained in 3 patients with SCO and 10 healthy individuals using high-throughput RNA-sequencing. We identified 37 dysregulated miRNAs and 1636 dysregulated mRNAs in patients with SCO compared to the healthy controls. Specifically, the 37 dysregulated miRNAs consisted of 27 up-regulated miRNAs and 10 down-regulated miRNAs; the 1636 dysregulated mRNAs consisted of 555 up-regulated mRNAs and 1081 down-regulated mRNAs. The target-genes of miRNAs were predicted, and 1334 negative correlations between miRNAs and mRNAs were used to construct an miRNA-mRNA regulatory network. Dysregulated genes were significantly enriched in pathways related to cancer, mTOR signaling and cell cycle signaling. Specifically, hsa-miR-26b-5p, hsa-miR-221-3p and hsa-miR-125b-2-3p were significantly dysregulated miRNAs and exhibited a high degree of connectivity with target genes. Overall, the expression of dysregulated genes in tumor tissues and peripheral blood samples of patients with SCO measured by quantitative real-time polymerase chain reaction corroborated with our bioinformatics analyses based on the expression profiles of PBMCs from patients with SCO. Thus, hsa-miR-26b-5p, hsa-miR-221-3p and hsa-miR-125b-2-3p may be involved in SCO tumorigenesis.

  • 推荐引用方式
    GB/T 7714:
    Xie Lin,Liao Yedan,Shen Lida, et al. Identification of the miRNA-mRNA regulatory network of small cell osteosarcoma based on RNA-seq [J].ONCOTARGET,2017,8(26):42525-42536.
  • APA:
    Xie Lin,Liao Yedan,Shen Lida,Hu Fengdi,&Yang Zuozhang.(2017).Identification of the miRNA-mRNA regulatory network of small cell osteosarcoma based on RNA-seq .ONCOTARGET,8(26):42525-42536.
  • MLA:
    Xie Lin, et al. "Identification of the miRNA-mRNA regulatory network of small cell osteosarcoma based on RNA-seq" .ONCOTARGET 8,26(2017):42525-42536.
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